Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: SortMeRNA
Upstream-Contact: jenya.kopylov@gmail.com, laurent.noe@lifl.fr, helene.touzet@lifl.fr
Source: https://github.com/biocore/sortmerna

Files: *
Copyright: 2012-2014 Bonsai Bioinformatics Research Group, LIFL and
           INRIA Nord-Europe, France
           OTU-picking extensions developed in the Knight Lab, BioFrontiers Institute,
           University of Colorado at Boulder, Boulder, CO
           jenya.kopylov@gmail.com, laurent.noe@lifl.fr, helene.touzet@lifl.fr
License: LGPL-3+

Files: 3rdparty/alp/*
Copyright: John Spouge, Sergey Sheetlin
License: PublicDomain
                           PUBLIC DOMAIN NOTICE
              National Center for Biotechnology Information
 .
 This software/database is a "United States Government Work" under the
 terms of the United States Copyright Act.  It was written as part of
 the author's offical duties as a United States Government employee and
 thus cannot be copyrighted.  This software/database is freely available
 to the public for use. The National Library of Medicine and the U.S.
 Government have not placed any restriction on its use or reproduction.
 .
 Although all reasonable efforts have been taken to ensure the accuracy
 and reliability of the software and data, the NLM and the U.S.
 Government do not and cannot warrant the performance or results that
 may be obtained by using this software or data. The NLM and the U.S.
 Government disclaim all warranties, express or implied, including
 warranties of performance, merchantability or fitness for any particular
 purpose.
 .
 Please cite the author in any work or product based on this material.

Files: include/kseq.h
Copyright: 2008 Genome Research Ltd (GRL)
License: Expat

Files: include/sse2neon.h
Copyright: 2015-2024 SSE2NEON Contributors.
License: Expat

Files: src/sortmerna/ssw.c
Copyright: 2012-1015 Boston College.
           Mengyao Zhao <zhangmp@bc.edu>
License: expat

Files: debian/*
Copyright: 2015 Tim Booth <tbooth@ceh.ac.uk>
           2015-2022 Andreas Tille <tille@debian.org>
           2023 Étienne Mollier <emollier@debian.org>
License: LGPL-3+


License: LGPL-3+
 SortMeRNA is free software: you can redistribute it and/or modify
 it under the terms of the GNU Lesser General Public License as published by
 the Free Software Foundation, either version 3 of the License, or
 (at your option) any later version.
 .
 SortMeRNA is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU Lesser General Public License for more details.
 .
 On Debian systems you can find a copy of the GNU Lesser General
 Public License in /usr/share/common-licenses/LGPL.

License: Expat
   Permission is hereby granted, free of charge, to any person obtaining
   a copy of this software and associated documentation files (the
   "Software"), to deal in the Software without restriction, including
   without limitation the rights to use, copy, modify, merge, publish,
   distribute, sublicense, and/or sell copies of the Software, and to
   permit persons to whom the Software is furnished to do so, subject to
   the following conditions:
 .
   The above copyright notice and this permission notice shall be
   included in all copies or substantial portions of the Software.
 .
   THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
   EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
   MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
   NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
   BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
   ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
   CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
   SOFTWARE.

