Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Rhtslib
Upstream-Contact: Bioconductor Package Maintainer <maintainer@bioconductor.org>
Source: https://bioconductor.org/packages/Rhtslib/
Files-Excluded: */inst/doc/*.html

Files: *
Copyright: 2014-2019 Nathaniel Hayden,
 Martin Morgan,
 Bioconductor Package Maintainer
License: LGPL-2+

Files: inst/include/*.c
       inst/include/*.h
Copyright: 2008-2013, 2015 Genome Research Ltd.
           2009-2012 Broad Institute.
License: MIT
 Permission is hereby granted, free of charge, to any person obtaining
 a copy of this software and associated documentation files (the
 "Software"), to deal in the Software without restriction, including
 without limitation the rights to use, copy, modify, merge, publish,
 distribute, sublicense, and/or sell copies of the Software, and to
 permit persons to whom the Software is furnished to do so, subject to
 the following conditions:
 .
 The above copyright notice and this permission notice shall be
 included in all copies or substantial portions of the Software.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
 EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
 NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
 BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
 ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
 CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 SOFTWARE.

Files: src/htslib-*/cram/*
Copyright: 2003-2016 Genome Research Ltd., James Bonfield <jkb@sanger.ac.uk>
           1995-2003 MEDICAL RESEARCH COUNCIL
           1994-1997, 2001-2002 MEDICAL RESEARCH COUNCIL
License: Various_BSD-3-Clause
 The files in the 'cram' directory are under one or both of the following
 licenses.
 .
 ---------------------------------------------------------------------------
 .
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:
 .
 1. Redistributions of source code must retain the above copyright notice,
 this list of conditions and the following disclaimer.
 .
 2. Redistributions in binary form must reproduce the above copyright notice,
 this list of conditions and the following disclaimer in the documentation
 and/or other materials provided with the distribution.
 .
 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
 Institute nor the names of its contributors may be used to endorse or promote
 products derived from this software without specific prior written permission.
 .
 THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND
 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
 DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE
 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 .
 ---------------------------------------------------------------------------
 .
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:
 .
 1 Redistributions of source code must retain the above copyright notice,
 this list of conditions and the following disclaimer.
 .
 2 Redistributions in binary form must reproduce the above copyright notice,
 this list of conditions and the following disclaimer in the documentation
 and/or other materials provided with the distribution.
 .
 3 Neither the name of the MEDICAL RESEARCH COUNCIL, THE LABORATORY OF
 MOLECULAR BIOLOGY nor the names of its contributors may be used to endorse or
 promote products derived from this software without specific prior written
 permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
 DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
 (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
 LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
 ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Files: debian/*
Copyright: 2019 Andreas Tille <tille@debian.org>
License: LGPL-2+

License: LGPL-2+
 This program is free software: you can redistribute it and/or modify it
 under the terms of the GNU Lesser General Public License as published by
 the Free Software Foundation version 2 of the License, or (at your
 option) any later version.  This program is distributed in the hope that
 it will be useful, but WITHOUT ANY WARRANTY; without even the implied
 warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
 .
 On Debian systems you can find the full text of the GNU Lesser General
 Public License version 2 license at /usr/share/common-licenses/LGPL-2.
