infernal (1.1.5-3) unstable; urgency=medium

  * Fix clean target
    Closes: #1045517
  * Standards-Version: 4.7.0 (routine-update)
  * Drop ${shlibs:Depends} from doc package

 -- Andreas Tille <tille@debian.org>  Tue, 17 Dec 2024 18:38:04 +0100

infernal (1.1.5-2) unstable; urgency=medium

  * Team upload.
  * d/bin/cmalign: adjust SSE2 check to only run on i386 systems, allowing
                   the /usr/lib/infernal/cm* apps to run on arm64 systems.

 -- Michael R. Crusoe <crusoe@debian.org>  Sat, 16 Sep 2023 15:58:22 +0200

infernal (1.1.5-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * Set field Upstream-Name in debian/copyright.
  * Fix typo in debian/rules rules: override_dh_compress  ⇒ override_dh_compress
  * Remove obsolete field Name from debian/upstream/metadata (already present in
    machine-readable debian/copyright).
  * d/control: build for arm64
  * d/upstream/metadata: link to their GitHub repo
  * d/rules: only pass -msse2 on i386
  * d/patches: forward upstream

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 14 Sep 2023 22:03:23 +0200

infernal (1.1.4-1) unstable; urgency=medium

  * Enable Architecture: all builds on arm4
    Closes: #976550
  * New upstream version
  * Standards-Version: 4.5.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Remove trailing whitespace in debian/rules (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * No tab in license text (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 11 Dec 2020 18:49:26 +0100

infernal (1.1.3-5) unstable; urgency=medium

  * Make build reproducible
    Closes: #953117
  * Standards-Version: 4.5.0 (routine-update)
  * Add salsa-ci file (routine-update)

 -- Andreas Tille <tille@debian.org>  Wed, 04 Mar 2020 19:51:06 +0100

infernal (1.1.3-4) unstable; urgency=medium

  * Team upload.
  * fix i386 build by always setting -msse2

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 07 Dec 2019 11:22:55 +0100

infernal (1.1.3-3) unstable; urgency=medium

  [ Chris Lamb ]
  * Make the build reproducible
    Closes: #946315
  * Enable "nocheck" build profile
    Closes: #946314

  [ Andreas Tille ]
  * Remove patches autoreconf.patch, format_security.patch that are
    missing from debian/patches/series.
  * debian/copyright: use spaces rather than tabs to start continuation
    lines.
  * Set upstream metadata fields: Name (from ./configure).

 -- Andreas Tille <tille@debian.org>  Sat, 07 Dec 2019 08:56:34 +0100

infernal (1.1.3-2) unstable; urgency=medium

  * Team upload.
  * Add python3 build-dep for `make check`
  * Secure URI in copyright format
  * Remove trailing whitespace in debian/changelog
  * Trim trailing whitespace.
  * Set upstream metadata fields: Bug-Submit.
  * Enable a verbose build log
  * infernal-doc: mark Multi-Arch: foreign (thanks Multiarch hinter!)
  * debian/patches/hardening: added CPPFLAGS to easel, rmark, and hmmer/profmark
  * Install example binaries into /usr/lib/ and symlink them into the
    doc/infernal/examples directory (fixes a FHS violation)
  * Added missing autopkgtest dependency on python3

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 01 Dec 2019 16:35:34 +0100

infernal (1.1.3-1) unstable; urgency=medium

  * New upstream version
    - Upstream accepted patch for reproducible builds
    - autoreconf now works without respective non-applicable patch
  * Still debian/TODO: remove code copy of hmmer
  * debhelper-compat 12
  * Standards-Version: 4.4.1

 -- Steffen Moeller <moeller@debian.org>  Sat, 30 Nov 2019 00:03:03 +0100

infernal (1.1.2-2) unstable; urgency=medium

  * Fix homepage
  * Add debian/TODO: remove code copy of hmmer
  * debhelper 10
  * d/watch: version=4
  * Added references to RRID and OMICtools registries (Steffen Moeller)
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.1.5
  * Fix configure.ac to enable autoreconf
  * Fix spelling

 -- Andreas Tille <tille@debian.org>  Mon, 16 Jul 2018 12:20:32 +0200

infernal (1.1.2-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.
  * Fix watchfile.
  * Make build reproducible.

 -- Sascha Steinbiss <satta@debian.org>  Sat, 06 Aug 2016 00:00:56 +0000

infernal (1.1.1-5) unstable; urgency=medium

  * Team upload.
  [Canberk Koç]
  * Added Autopkgtest suite
  * debian/rules file changed
  * debian/tests directory added

  [ Andreas Tille ]
  * Move packaging from SVN to Git
  * cme fix dpkg-control
  * Better hardening

 -- Canberk Koç  <canberkkoc@gmail.com>  Wed, 22 Jun 2016 05:35:41 +0300

infernal (1.1.1-4) unstable; urgency=medium

  * Architecture: any-amd64 any-i386
    Closes: #815310
  * cme fix dpkg-control
  * Secure Vcs-Browser

 -- Andreas Tille <tille@debian.org>  Sat, 20 Feb 2016 23:07:53 +0100

infernal (1.1.1-3) unstable; urgency=medium

  * cme fix dpkg-control
  * drop dpg package at all since it is auto-generated by dpkg now
    Closes: #766309

 -- Andreas Tille <tille@debian.org>  Mon, 21 Dec 2015 09:35:57 +0100

infernal (1.1.1-2) unstable; urgency=medium

  * Re-enable i386 by checking availability of sse2
  * d/copyright: Deleted unneeded paragraphs
  * d/rules: drop redundant targets
  * d/README*: drop pararaphs about squid which is not part of the
    source any more

 -- Andreas Tille <tille@debian.org>  Thu, 18 Sep 2014 10:00:12 +0200

infernal (1.1.1-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.

 -- Charles Plessy <plessy@debian.org>  Fri, 08 Aug 2014 21:45:26 +0900

infernal (1.1-1) unstable; urgency=low

  * Team upload.
  * New upstream release.
  * Removed i386 architecture as some processors do not provide SSE2.
  * Conforms with Policy 3.9.5.

 -- Charles Plessy <plessy@debian.org>  Sun, 01 Dec 2013 10:30:00 +0900

infernal (1.1~rc4-2) unstable; urgency=low

  * Team upload.
  * Build-depends on libperl4-corelibs-perl (Closes: #724119).
  * debian/control: removed myself from Uploaders.

 -- Charles Plessy <plessy@debian.org>  Mon, 23 Sep 2013 10:57:17 +0900

infernal (1.1~rc4-1) unstable; urgency=low

  * New upstream source
  * debian/source/format: 3.0 (quilt)
  * debian/control:
     - cme fix dpkg-control
     - debhelper 9
     - do not Build-Depend: quilt since source format implies this
     - The package builds only on architectures with SSE instructions.
       Quoting from build log on armel:
       configure: WARNING: Infernal 1.1 requires VMX or SSE capability for
                  parallel instructions.
       configure: error: It appears your platform has neither and will not
                  support Infernal.
       So all non i386/amd64 architectures were excluded
       Closes: #718742
     - use anonscm in Vcs fields
  * debian/rules:
     - remove redundant setting for flags which is handled by debhelper 9
       automatically
     - use xz compression
  * debian/copyright: DEP5

 -- Andreas Tille <tille@debian.org>  Mon, 05 Aug 2013 12:06:12 +0200

infernal (1.1~rc2-1) unstable; urgency=low

  * New upstream version - aiming to support RNAWorld BOINC project,
    with many thanks and regards to Yoyo!
    - cmscore no longer available
  * Bumped policy to 3.9.4 (no changes needed)
    - introduced hardening, with it build dep on
      dpkg-dev (>= 1.16.1~)

 -- Steffen Moeller <moeller@debian.org>  Wed, 01 May 2013 20:24:17 +0200

infernal (1.0.2-3) UNRELEASED; urgency=low

  [ Steffen Moeller ]
  * Extra fixed for lintian cleanliness (Steffen)

  [ Andreas Tille ]
  * debian/upstream:
    - do not specify DOI twice
    - Moved PMID to references
  * debian/control:
    - Fixed Vcs-Svn field
    - Standards-Version: 3.9.3 (no changes needed)

 -- Andreas Tille <tille@debian.org>  Thu, 08 Mar 2012 11:44:54 +0100

infernal (1.0.2-2) unstable; urgency=low

  * Series of mall fixes (Closes: #643407).
  * source/format 3.0
  * Policy to 3.9.2
  * added infernal-dbg
  * corrected upstream's email address

 -- Steffen Moeller <moeller@debian.org>  Tue, 27 Sep 2011 15:48:27 +0200

infernal (1.0.2-1) unstable; urgency=low

  * New upstream version

 -- Andreas Tille <tille@debian.org>  Tue, 03 Nov 2009 11:15:34 +0100

infernal (1.0-2) unstable; urgency=low

  * Switch to CDBS to benefit from automagical config.{sub,guess}
    update (debian/rules). Closes: #550253.
  * debian/control:
    - Depend on cdbs, downgraded requirement on debhelper from 7.1 to 7.
    - Transferred bibliographic information from the package description
      to debian/upstream-metadata.yaml.
    - Clarified the short description of the documentation package.
  * Removed debian/infernal.dirs, not needed.
  * Edited README.source, removing mention that infernal is in contrib.
  * debian/copyright points at the version 3 of the GPL.

 -- Charles Plessy <plessy@debian.org>  Sat, 10 Oct 2009 11:22:35 +0900

infernal (1.0-1) unstable; urgency=low

  [ Charles Plessy ]
  * Updated my email address.

  [ Andreas Tille ]
  * New upstream version
  * debian/control:
    - Standards-Version: 3.8.3 (no changes needed)
    - Added myself to uploaders
    - s/Debian-Med/Debian Med/
    - Build-Depends: debhelper (>= 7.1) autotools-dev
    - Package: infernal-doc
  * debian/rules rewritten to make use of short dh
  * debian/copyright:
    - added myself to Copyright holders of debian/*
    - squid is not part of the upstream tarball anymore so this
      paragraph was deleted
    - files/Userguide.pdf: Copied comment about PDF = source from
      README.Debian
  * debian/infernal-doc.doc-base
  * debian/infernal.install: install src/{trcyk,truncyk_check} to
    /usr/bin

  * TODO: Convince upstream to release libeazel which is also used in
    hmmer as a separate library instead of copying the code into
    different projects

 -- Andreas Tille <tille@debian.org>  Fri, 25 Sep 2009 15:17:22 +0200

infernal (0.81-1) experimental; urgency=low

  * Initial release (Closes: #441840)

 -- Steffen Moeller <moeller@debian.org>  Mon, 10 Sep 2007 23:15:37 +0200
