Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: HMMER
Upstream-Contact: Sean R. Eddy <eddys@janelia.hhmi.org>
Source: http://hmmer.org/download.html
Files-Excluded: */libdivsufsort
                */.gitignore
                configure

Files: *
Copyright: 1992-2010 Sean R. Eddy <eddy@genetics.wustl.edu>
                     Howard Hughes Medical Institute
           1992-2004 Washington University School of Medicine
           1992-1994 MRC Laboratory of Molecular Biology
License: GPL-3

Files: easel/*
Copyright: 2004-2009 Sean R. Eddy <eddy@genetics.wustl.edu>
           2006-2009 Howard Hughes Medical Institute
License: The-Janelia-Farm-Software-License
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are
 met:
 .
 1. Redistributions of source code must retain the above copyright
    notice, this list of conditions and the following disclaimer.
 .
 2. Redistributions in binary form must reproduce the above copyright
    notice, this list of conditions and the following disclaimer in
    the documentation and/or other materials provided with the
    distribution.
 .
 3. Neither the name of the Howard Hughes Medical Institute nor the
    names of its contributors may be used to endorse or promote
    products derived from this software without specific prior written
    permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
 LIMITED TO, ANY IMPLIED WARRANTIES OF MERCHANTABILITY,
 NON-INFRINGEMENT, OR FITNESS FOR A PARTICULAR PURPOSE ARE
 DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
 SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
 REASONABLE ROYALTIES; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
 ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR
 TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE
 USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
 DAMAGE.

Files: debian/*
Copyright: 1998 John Lapeyre <lapeyre@physics.arizona.edu>
           1999-2001 Matthew Vernon <matthew@debian.org>
           2006-2007 Nelson A. de Oliveira <naoliv@gmail.com>
           2008-2012 Andreas Tille <tille@debian.org>
                     Charles Plessy <plessy@debian.org>
           2010 Eric Talevich <etal@uga.edu>,
           2010 Steffen Möller <moeller@debian.org>
           2012-2017 Andreas Tille <tille@debian.org>
License: GPL-3

License: GPL-3
   This package is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License version 3 as published
   by the Free Software Foundation.
 .
   This package is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.
 .
   You should have received a copy of the GNU General Public License
   along with this package; if not, write to the Free Software
   Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
 .
 On Debian systems, the complete text of the GNU General
 Public License can be found in `/usr/share/common-licenses/GPL-3'.

Files: easel/esl_sse.*
       easel/esl_vmx.*
Copyright: 2007 Julien Pommier
           1992 Stephen Moshier
           2015 Howard Hughes Medical Institute
License: as-is
  This software is provided 'as-is', without any express or implied
  warranty.  In no event will the authors be held liable for any damages
  arising from the use of this software.
 .
  Permission is granted to anyone to use this software for any purpose,
  including commercial applications, and to alter it and redistribute it
  freely, subject to the following restrictions:
 .
  1. The origin of this software must not be misrepresented; you must not
     claim that you wrote the original software. If you use this software
     in a product, an acknowledgment in the product documentation would be
     appreciated but is not required.
  2. Altered source versions must be plainly marked as such, and must not be
     misrepresented as being the original software.
  3. This notice may not be removed or altered from any source distribution.
 .
   In turn, Pommier had derived the logf() and expf() functions from
   serial versions in the Cephes math library. According to its
   readme, Cephes is "copyrighted by the author" and "may be used
   freely but it comes with no support or guarantee."  Cephes is
   available in NETLIB [http://www.netlib.org/cephes/]. NETLIB is
   widely considered to be a free scientific code repository, though
   the copyright and license status of many parts, including Cephes,
   is ill-defined. We have attached Moshier's copyright,
   to credit his original contribution. Thanks to both Pommier and
   Moshier for their clear code.
