hisat2 (2.2.1-5) unstable; urgency=medium

  * d/patches/no_imp: add Python3.12 support. Closes: #1074739

 -- Michael R. Crusoe <crusoe@debian.org>  Tue, 09 Jul 2024 12:26:53 +0200

hisat2 (2.2.1-4) unstable; urgency=medium

  * Team upload
  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)
  * Update lintian-overrides

 -- Andreas Tille <tille@debian.org>  Fri, 14 Oct 2022 20:18:28 +0200

hisat2 (2.2.1-3) unstable; urgency=medium

  * Team upload.
  * Fix watchfile to detect new versions on github (routine-update)
  * Standards-Version: 4.6.0 (routine-update)
  * Fix debian/source/lintian-overrides

 -- Andreas Tille <tille@debian.org>  Tue, 28 Sep 2021 10:35:43 +0200

hisat2 (2.2.1-2) unstable; urgency=medium

  * debian/patches/riscv5: fix compilation on riscv5
  * Standards-Version: 4.5.1 (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 27 Jan 2021 17:34:32 +0100

hisat2 (2.2.1-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * Team upload.
  * New upstream version
  * debhelper-compat 13 (routine-update)

  [ Michael R. Crusoe ]
  * Refresh the patches

 -- Michael R. Crusoe <crusoe@debian.org>  Tue, 11 Aug 2020 13:42:31 +0200

hisat2 (2.2.0-2) unstable; urgency=medium

  * Fix simde patch for ppc64el
  * Fix missing $(LDFLAGS) in hardening patch

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 06 May 2020 20:48:11 +0200

hisat2 (2.2.0-1) unstable; urgency=medium

  * Use the libsimde-dev package instead of our code copy.
  * Standards-Version: 4.5.0 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Upstream moved to GitHub
  * Use the HISAT2 citation instead of the HISAT paper
  * New upstream version
  * Freshen the patches
  * Added patch to fix the manual path

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 19 Apr 2020 23:04:26 +0200

hisat2 (2.1.0-4) unstable; urgency=medium

  * Integrate recent changes with the new python3-hisat2 package.
  * Made it easier to cross build the package

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 11 Feb 2020 18:22:17 +0100

hisat2 (2.1.0-2nopython3hisat3) unstable; urgency=medium

  * armhf armel ppc64el s390x: add -Wno-narrowing

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 04 Jan 2020 22:52:02 +0100

hisat2 (2.1.0-2nopython3hisat2) unstable; urgency=medium

  [ Saira Hussain ]
  * Add autopkgtest

  [ Andreas Tille ]
  * Install hisat2_extract_splice_sites.py
  * Recommends: bcftools, samtools

  [ Michael R. Crusoe ]
  * Skip the new python3-hisat2 package while we wait for 2.1.0-3 to go
    through the NEW queue.
  * Include SIMD everywhere headers and enable building on all architectures.
  * debhelper-compat 12
  * Remove trailing whitespace in debian/control
  * Ported Python scripts to Python 3 using 2to3. Closes: #943125

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 30 Dec 2019 20:08:00 +0100

hisat2 (2.1.0-2) unstable; urgency=medium

  * Team upload.
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Fix wrong path for Perl interpreter
  * Do not parse d/changelog

 -- Andreas Tille <tille@debian.org>  Mon, 24 Sep 2018 11:52:06 +0200

hisat2 (2.1.0-1) unstable; urgency=medium

  * Team upload

  [ Steffen Moeller ]
  * debian/upstream/metadata: Added ref to OMICtools

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.1.0 (no changes needed)

 -- Andreas Tille <tille@debian.org>  Mon, 04 Sep 2017 14:49:40 +0200

hisat2 (2.0.5-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Architecture: amd64 kfreebsd-amd64
    Closes: #834862, #834863
  * d/watch:
     - version=4
     - xz compression
  * debhelper 10

 -- Andreas Tille <tille@debian.org>  Fri, 09 Dec 2016 13:45:26 +0100

hisat2 (2.0.4-2) unstable; urgency=medium

  * Team upload.
  * Fix Vcs-Git.
  * Fix build on kFreeBSD. Thanks to Steven Chamberlain for the patch.
    Closes: #834864
  * Make build reproducible.
    - Set C(XX,PP)FLAGS to make sure -fdebug-prefix-map is set.
    - Set TZ=UTC.
  * Remove arch-restrictive compiler flags.
    Closes: #834862

 -- Sascha Steinbiss <satta@debian.org>  Thu, 25 Aug 2016 15:46:42 +0000

hisat2 (2.0.4-1) unstable; urgency=medium

  * Initial release. (Closes: #834592)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 17 Aug 2016 05:15:40 -0700
